IL_4V8Q_128

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

4V8Q|1|BA|G|129|||A, 4V8Q|1|BA|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_128 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.1286

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

4V8Q|1|BA|U|129
4V8Q|1|BA|G|129|||A
4V8Q|1|BA|A|130
4V8Q|1|BA|C|131
*
4V8Q|1|BA|G|231
4V8Q|1|BA|G|232

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BP

30S RIBOSOMAL PROTEIN S16

Chain BQ

30S RIBOSOMAL PROTEIN S17

Chain BT

30S RIBOSOMAL PROTEIN S20