IL_4V8Q_139

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_139 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.1597

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V8Q|1|BA|G|446
4V8Q|1|BA|G|447
4V8Q|1|BA|A|448
4V8Q|1|BA|C|449
4V8Q|1|BA|G|450
*
4V8Q|1|BA|C|483
4V8Q|1|BA|G|484
4V8Q|1|BA|G|485
4V8Q|1|BA|U|486
4V8Q|1|BA|A|487
4V8Q|1|BA|C|488

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BD

30S RIBOSOMAL PROTEIN S4

Chain BP

30S RIBOSOMAL PROTEIN S16