IL_4V8Q_145

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_145 not in the Motif Atlas

Homologous match to IL_4LFB_025

Geometric discrepancy: 0.0836

The information below is about IL_4LFB_025

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

4V8Q|1|BA|G|597
4V8Q|1|BA|U|598
*
4V8Q|1|BA|A|640
4V8Q|1|BA|U|641
4V8Q|1|BA|A|642
4V8Q|1|BA|C|643

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BH

30S RIBOSOMAL PROTEIN S8

Chain BQ

30S RIBOSOMAL PROTEIN S17