IL_4V8Q_153

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_153 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0942

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V8Q|1|BA|C|779
4V8Q|1|BA|A|780
4V8Q|1|BA|A|781
4V8Q|1|BA|A|782
4V8Q|1|BA|C|783
*
4V8Q|1|BA|G|799
4V8Q|1|BA|G|800
4V8Q|1|BA|U|801
4V8Q|1|BA|A|802
4V8Q|1|BA|G|803

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AD

50S RIBOSOMAL PROTEIN L2

Chain BK

30S RIBOSOMAL PROTEIN S11