IL_4V8Q_155

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

4V8Q|1|BA|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_155 not in the Motif Atlas

Homologous match to IL_5J7L_039

Geometric discrepancy: 0.1094

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

4V8Q|1|BA|G|922
4V8Q|1|BA|A|923
*
4V8Q|1|BA|U|1393
4V8Q|1|BA|A|1394
4V8Q|1|BA|C|1395

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BE

30S RIBOSOMAL PROTEIN S5