IL_4V8Q_158
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGG*CACA
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Q_158 not in the Motif Atlas
- Geometric match to IL_4WF9_003
- Geometric discrepancy: 0.2197
- The information below is about IL_4WF9_003
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_90351.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
4V8Q|1|BA|U|952
4V8Q|1|BA|G|953
4V8Q|1|BA|G|954
*
4V8Q|1|BA|C|1226
4V8Q|1|BA|A|1227
4V8Q|1|BA|C|1228
4V8Q|1|BA|A|1229
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain B2
- SMALL PROTEIN B SMPB
- Chain BM
- 30S RIBOSOMAL PROTEIN S13
- Chain BS
- 30S RIBOSOMAL PROTEIN S19
- Chain BV
- Transfer RNA; tRNA
Coloring options: