IL_4V8Q_160
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGC*GCA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: UGC,GCA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Q_160 not in the Motif Atlas
- Geometric match to IL_4WF9_034
- Geometric discrepancy: 0.1961
- The information below is about IL_4WF9_034
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_52767.5
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 28
Unit IDs
4V8Q|1|BA|U|997
4V8Q|1|BA|G|998
4V8Q|1|BA|C|999
*
4V8Q|1|BA|G|1042
4V8Q|1|BA|C|1043
4V8Q|1|BA|A|1044
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BC
- 30S RIBOSOMAL PROTEIN S3
Coloring options: