IL_4V8Q_166
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CG*CUG
- Length
- 5 nucleotides
- Bulged bases
- 4V8Q|1|BA|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Q_166 not in the Motif Atlas
- Geometric match to IL_2PN3_003
- Geometric discrepancy: 0.2979
- The information below is about IL_2PN3_003
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
4V8Q|1|BA|C|1060
4V8Q|1|BA|G|1061
*
4V8Q|1|BA|C|1195
4V8Q|1|BA|U|1196
4V8Q|1|BA|G|1197
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain B2
- SMALL PROTEIN B SMPB
- Chain BC
- 30S RIBOSOMAL PROTEIN S3
- Chain BE
- 30S RIBOSOMAL PROTEIN S5
- Chain BI
- 30S RIBOSOMAL PROTEIN S9
- Chain BJ
- 30S RIBOSOMAL PROTEIN S10
- Chain BN
- 30S RIBOSOMAL PROTEIN S14
Coloring options: