IL_4V8Q_168

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UAG,CUA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_168 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.3771

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V8Q|1|BA|U|1122
4V8Q|1|BA|A|1123
4V8Q|1|BA|G|1124
*
4V8Q|1|BA|C|1149
4V8Q|1|BA|U|1150
4V8Q|1|BA|A|1151

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BI

30S RIBOSOMAL PROTEIN S9

Chain BJ

30S RIBOSOMAL PROTEIN S10