IL_4V8Q_178
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Q_178 not in the Motif Atlas
- Geometric match to IL_5MWI_007
- Geometric discrepancy: 0.155
- The information below is about IL_5MWI_007
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 259
Unit IDs
4V8Q|1|BA|G|1405
4V8Q|1|BA|U|1406
4V8Q|1|BA|C|1407
*
4V8Q|1|BA|G|1494
4V8Q|1|BA|U|1495
4V8Q|1|BA|C|1496
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain B2
- SMALL PROTEIN B SMPB
- Chain BM
- 30S RIBOSOMAL PROTEIN S13
- Chain BV
- Transfer RNA; tRNA
- Chain BX
- MRNA
Coloring options: