IL_4V8Q_178

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_178 not in the Motif Atlas

Geometric match to IL_5MWI_007

Geometric discrepancy: 0.155

The information below is about IL_5MWI_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

4V8Q|1|BA|G|1405
4V8Q|1|BA|U|1406
4V8Q|1|BA|C|1407
*
4V8Q|1|BA|G|1494
4V8Q|1|BA|U|1495
4V8Q|1|BA|C|1496

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain B2

SMALL PROTEIN B SMPB

Chain BM

30S RIBOSOMAL PROTEIN S13

Chain BV

Transfer RNA; tRNA

Chain BX

MRNA