IL_4V8Q_179

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

4V8Q|1|BA|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_179 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.2622

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

4V8Q|1|BA|C|1407
4V8Q|1|BA|A|1408
4V8Q|1|BA|C|1409
*
4V8Q|1|BA|G|1491
4V8Q|1|BA|A|1492
4V8Q|1|BA|A|1493
4V8Q|1|BA|G|1494

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain B2

SMALL PROTEIN B SMPB

Chain BL

30S RIBOSOMAL PROTEIN S12

Chain BM

30S RIBOSOMAL PROTEIN S13

Chain BX

MRNA