IL_4V8Q_195
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAACUCUG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Q_195 not in the Motif Atlas
- Homologous match to IL_9DFE_066
- Geometric discrepancy: 0.0719
- The information below is about IL_9DFE_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22854.4
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 7
Unit IDs
4V8Q|1|AA|G|1666
4V8Q|1|AA|G|1667
4V8Q|1|AA|A|1668
4V8Q|1|AA|A|1669
4V8Q|1|AA|C|1670
4V8Q|1|AA|U|1671
4V8Q|1|AA|C|1672
4V8Q|1|AA|U|1673
4V8Q|1|AA|G|1674
*
4V8Q|1|AA|C|1990
4V8Q|1|AA|U|1991
4V8Q|1|AA|G|1992
4V8Q|1|AA|U|1993
4V8Q|1|AA|C|1994
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AE
- 50S RIBOSOMAL PROTEIN L3
- Chain AO
- 50S RIBOSOMAL PROTEIN L14
Coloring options: