IL_4V8Q_198

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCCUGCGUAGGAUAGGUG*CCACCCUGGCG

Length

30 nucleotides

Bulged bases

4V8Q|1|AA|C|2179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Q|1|AA|C|2105
4V8Q|1|AA|G|2106
4V8Q|1|AA|C|2107
4V8Q|1|AA|C|2108
4V8Q|1|AA|U|2109
4V8Q|1|AA|G|2110
4V8Q|1|AA|C|2111
4V8Q|1|AA|G|2112
4V8Q|1|AA|U|2113
4V8Q|1|AA|A|2114
4V8Q|1|AA|G|2115
4V8Q|1|AA|G|2116
4V8Q|1|AA|A|2117
4V8Q|1|AA|U|2118
4V8Q|1|AA|A|2119
4V8Q|1|AA|G|2120
4V8Q|1|AA|G|2121
4V8Q|1|AA|U|2122
4V8Q|1|AA|G|2123
*
4V8Q|1|AA|C|2174
4V8Q|1|AA|C|2175
4V8Q|1|AA|A|2176
4V8Q|1|AA|C|2177
4V8Q|1|AA|C|2178
4V8Q|1|AA|C|2179
4V8Q|1|AA|U|2180
4V8Q|1|AA|G|2181
4V8Q|1|AA|G|2182
4V8Q|1|AA|C|2183
4V8Q|1|AA|G|2184

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S RIBOSOMAL PROTEIN L1

Chain BK

30S RIBOSOMAL PROTEIN S11

Chain BW

Transfer RNA; tRNA