IL_4V8Q_199

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAGCCUGUGAAC*GGGAGGCGCCGGUGAAAUAC

Length

34 nucleotides

Bulged bases

4V8Q|1|AA|U|2132, 4V8Q|1|AA|G|2133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Q|1|AA|G|2123
4V8Q|1|AA|G|2124
4V8Q|1|AA|G|2125
4V8Q|1|AA|A|2126
4V8Q|1|AA|G|2127
4V8Q|1|AA|C|2128
4V8Q|1|AA|C|2129
4V8Q|1|AA|U|2130
4V8Q|1|AA|G|2131
4V8Q|1|AA|U|2132
4V8Q|1|AA|G|2133
4V8Q|1|AA|A|2134
4V8Q|1|AA|A|2135
4V8Q|1|AA|C|2136
*
4V8Q|1|AA|G|2155
4V8Q|1|AA|G|2156
4V8Q|1|AA|G|2157
4V8Q|1|AA|A|2158
4V8Q|1|AA|G|2159
4V8Q|1|AA|G|2160
4V8Q|1|AA|C|2161
4V8Q|1|AA|G|2162
4V8Q|1|AA|C|2163
4V8Q|1|AA|C|2164
4V8Q|1|AA|G|2165
4V8Q|1|AA|G|2166
4V8Q|1|AA|U|2167
4V8Q|1|AA|G|2168
4V8Q|1|AA|A|2169
4V8Q|1|AA|A|2170
4V8Q|1|AA|A|2171
4V8Q|1|AA|U|2172
4V8Q|1|AA|A|2173
4V8Q|1|AA|C|2174

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S RIBOSOMAL PROTEIN L1

Chain BW

Transfer RNA; tRNA