IL_4V8Q_202

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGGAAGAAG*UGUAAACU

Length

17 nucleotides

Bulged bases

4V8Q|1|BA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Q|1|BA|A|408
4V8Q|1|BA|G|409
4V8Q|1|BA|G|410
4V8Q|1|BA|A|411
4V8Q|1|BA|A|412
4V8Q|1|BA|G|413
4V8Q|1|BA|A|414
4V8Q|1|BA|A|415
4V8Q|1|BA|G|416
*
4V8Q|1|BA|U|427
4V8Q|1|BA|G|428
4V8Q|1|BA|U|429
4V8Q|1|BA|A|430
4V8Q|1|BA|A|431
4V8Q|1|BA|A|432
4V8Q|1|BA|C|433
4V8Q|1|BA|U|434

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BD

30S RIBOSOMAL PROTEIN S4