IL_4V8Q_205

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAGGGAACCC*GGGGUGCCCCGCGAGGGGAGCCCUAG

Length

37 nucleotides

Bulged bases

4V8Q|1|BA|G|1001|||A, 4V8Q|1|BA|U|1025

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Q|1|BA|C|999
4V8Q|1|BA|U|1000
4V8Q|1|BA|A|1001
4V8Q|1|BA|G|1001|||A
4V8Q|1|BA|G|1002
4V8Q|1|BA|G|1003
4V8Q|1|BA|A|1004
4V8Q|1|BA|A|1005
4V8Q|1|BA|C|1006
4V8Q|1|BA|C|1007
4V8Q|1|BA|C|1008
*
4V8Q|1|BA|G|1021
4V8Q|1|BA|G|1022
4V8Q|1|BA|G|1023
4V8Q|1|BA|G|1024
4V8Q|1|BA|U|1025
4V8Q|1|BA|G|1026
4V8Q|1|BA|C|1027
4V8Q|1|BA|C|1028
4V8Q|1|BA|C|1029
4V8Q|1|BA|C|1030
4V8Q|1|BA|G|1030|||A
4V8Q|1|BA|C|1030|||B
4V8Q|1|BA|G|1030|||C
4V8Q|1|BA|A|1030|||D
4V8Q|1|BA|G|1031
4V8Q|1|BA|G|1032
4V8Q|1|BA|G|1033
4V8Q|1|BA|G|1034
4V8Q|1|BA|A|1035
4V8Q|1|BA|G|1036
4V8Q|1|BA|C|1037
4V8Q|1|BA|C|1038
4V8Q|1|BA|C|1039
4V8Q|1|BA|U|1040
4V8Q|1|BA|A|1041
4V8Q|1|BA|G|1042

Current chains

Chain BA

16S ribosomal RNA

Nearby chains