IL_4V8Q_211

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCGGCGAAGACAGCC*GGUCGAGUGGCG

Length

28 nucleotides

Bulged bases

4V8Q|1|AA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Q|1|AA|C|1038
4V8Q|1|AA|G|1039
4V8Q|1|AA|C|1040
4V8Q|1|AA|G|1041
4V8Q|1|AA|G|1042
4V8Q|1|AA|C|1043
4V8Q|1|AA|G|1044
4V8Q|1|AA|A|1045
4V8Q|1|AA|A|1046
4V8Q|1|AA|G|1047
4V8Q|1|AA|A|1048
4V8Q|1|AA|C|1049
4V8Q|1|AA|A|1050
4V8Q|1|AA|G|1051
4V8Q|1|AA|C|1052
4V8Q|1|AA|C|1053
*
4V8Q|1|AA|G|1106
4V8Q|1|AA|G|1107
4V8Q|1|AA|U|1108
4V8Q|1|AA|C|1109
4V8Q|1|AA|G|1110
4V8Q|1|AA|A|1111
4V8Q|1|AA|G|1112
4V8Q|1|AA|U|1113
4V8Q|1|AA|G|1114
4V8Q|1|AA|G|1115
4V8Q|1|AA|C|1116
4V8Q|1|AA|G|1117

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AH

50S RIBOSOMAL PROTEIN L6

Chain AJ

50S RIBOSOMAL PROTEIN L10

Chain AQ

50S RIBOSOMAL PROTEIN L16

Chain AZ

50S RIBOSOMAL PROTEIN L25