IL_4V8Q_212
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAGGUUGG*CCAUCCUUUAAAGAGUGCGUAAUAGCUCAC
- Length
- 39 nucleotides
- Bulged bases
- 4V8Q|1|AA|U|1061, 4V8Q|1|AA|A|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8Q|1|AA|G|1055
4V8Q|1|AA|G|1056
4V8Q|1|AA|A|1057
4V8Q|1|AA|G|1058
4V8Q|1|AA|G|1059
4V8Q|1|AA|U|1060
4V8Q|1|AA|U|1061
4V8Q|1|AA|G|1062
4V8Q|1|AA|G|1063
*
4V8Q|1|AA|C|1075
4V8Q|1|AA|C|1076
4V8Q|1|AA|A|1077
4V8Q|1|AA|U|1078
4V8Q|1|AA|C|1079
4V8Q|1|AA|C|1080
4V8Q|1|AA|U|1081
4V8Q|1|AA|U|1082
4V8Q|1|AA|U|1083
4V8Q|1|AA|A|1084
4V8Q|1|AA|A|1085
4V8Q|1|AA|A|1086
4V8Q|1|AA|G|1087
4V8Q|1|AA|A|1088
4V8Q|1|AA|G|1089
4V8Q|1|AA|U|1090
4V8Q|1|AA|G|1091
4V8Q|1|AA|C|1092
4V8Q|1|AA|G|1093
4V8Q|1|AA|U|1094
4V8Q|1|AA|A|1095
4V8Q|1|AA|A|1096
4V8Q|1|AA|U|1097
4V8Q|1|AA|A|1098
4V8Q|1|AA|G|1099
4V8Q|1|AA|C|1100
4V8Q|1|AA|U|1101
4V8Q|1|AA|C|1102
4V8Q|1|AA|A|1103
4V8Q|1|AA|C|1104
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain A9
- 50S RIBOSOMAL PROTEIN L36
- Chain AH
- 50S RIBOSOMAL PROTEIN L6
- Chain AJ
- 50S RIBOSOMAL PROTEIN L10
- Chain AK
- 50S RIBOSOMAL PROTEIN L11
- Chain AQ
- 50S RIBOSOMAL PROTEIN L16
- Chain AZ
- 50S RIBOSOMAL PROTEIN L25
- Chain BY
- Transfer-messenger RNA; tmRNA; 10Sa RNA; SsrA
Coloring options: