IL_4V8X_041
3D structure
- PDB id
- 4V8X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Thermus thermophilus ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UGCAUG*CAUG
- Length
- 10 nucleotides
- Bulged bases
- 4V8X|1|AA|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8X_041 not in the Motif Atlas
- Homologous match to IL_6CZR_365
- Geometric discrepancy: 0.2739
- The information below is about IL_6CZR_365
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_45699.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8X|1|AA|U|1052
4V8X|1|AA|G|1053
4V8X|1|AA|C|1054
4V8X|1|AA|A|1055
4V8X|1|AA|U|1056
4V8X|1|AA|G|1057
*
4V8X|1|AA|C|1203
4V8X|1|AA|A|1204
4V8X|1|AA|U|1205
4V8X|1|AA|G|1206
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AC
- 30S RIBOSOMAL PROTEIN S3
- Chain AJ
- 30S RIBOSOMAL PROTEIN S10
- Chain AN
- 30S RIBOSOMAL PROTEIN S14 TYPE Z
- Chain AX
- 5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*AP*AP*AP *AP*AP*UP*G U2M A2M A2MP*AP*AP*AP*A)-3'
- Chain AY
- TOXIN OF THE YOEB-YEFM TOXIN-ANTITOXIN SYSTEM
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