IL_4V8X_176

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8X_176 not in the Motif Atlas

Geometric match to IL_4LFB_041

Geometric discrepancy: 0.3131

The information below is about IL_4LFB_041

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

4V8X|1|BB|C|2
4V8X|1|BB|C|3
4V8X|1|BB|C|4
*
4V8X|1|BB|G|117
4V8X|1|BB|G|118

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BS

50S RIBOSOMAL PROTEIN L18