IL_4V8X_240

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8X_240 not in the Motif Atlas

Geometric match to IL_4V88_465

Geometric discrepancy: 0.1477

The information below is about IL_4V88_465

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V8X|1|CA|G|1405
4V8X|1|CA|U|1406
4V8X|1|CA|C|1407
*
4V8X|1|CA|G|1494
4V8X|1|CA|U|1495
4V8X|1|CA|C|1496

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CX

BACTERIAL TOXIN YOEB

Chain CY

TOXIN OF THE YOEB-YEFM TOXIN-ANTITOXIN SYSTEM

Chain DA

Large subunit ribosomal RNA; LSU rRNA