IL_4V8X_251
3D structure
- PDB id
- 4V8X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Thermus thermophilus ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GGGAG*CGUGGAUC
- Length
- 13 nucleotides
- Bulged bases
- 4V8X|1|DA|G|100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8X_251 not in the Motif Atlas
- Homologous match to IL_7RQB_004
- Geometric discrepancy: 0.0852
- The information below is about IL_7RQB_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.2
- Basepair signature
- cWW-tSS-L-tSH-L-R-R-cWW-L
- Number of instances in this motif group
- 18
Unit IDs
4V8X|1|DA|G|81
4V8X|1|DA|G|82
4V8X|1|DA|G|83
4V8X|1|DA|A|84
4V8X|1|DA|G|85
*
4V8X|1|DA|C|97
4V8X|1|DA|G|98
4V8X|1|DA|U|99
4V8X|1|DA|G|100
4V8X|1|DA|G|102
4V8X|1|DA|A|103
4V8X|1|DA|U|104
4V8X|1|DA|C|105
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain D2
- 50S RIBOSOMAL PROTEIN L29
- Chain DY
- 50S RIBOSOMAL PROTEIN L24
Coloring options: