IL_4V8X_331

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUGCGUAGGAUAGGUG*CACCCUG

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8X|1|DA|C|2108
4V8X|1|DA|U|2109
4V8X|1|DA|G|2110
4V8X|1|DA|C|2111
4V8X|1|DA|G|2112
4V8X|1|DA|U|2113
4V8X|1|DA|A|2114
4V8X|1|DA|G|2115
4V8X|1|DA|G|2116
4V8X|1|DA|A|2117
4V8X|1|DA|U|2118
4V8X|1|DA|A|2119
4V8X|1|DA|G|2120
4V8X|1|DA|G|2121
4V8X|1|DA|U|2122
4V8X|1|DA|G|2123
*
4V8X|1|DA|C|2175
4V8X|1|DA|A|2176
4V8X|1|DA|C|2177
4V8X|1|DA|C|2178
4V8X|1|DA|C|2179
4V8X|1|DA|U|2180
4V8X|1|DA|G|2181

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain CW

Transfer RNA; tRNA

Chain DC

50S RIBOSOMAL PROTEIN L1