IL_4V8X_334

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUGUGAACC*GGGGAG

Length

15 nucleotides

Bulged bases

4V8X|1|DA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8X_334 not in the Motif Atlas

Geometric match to IL_6CZR_143

Geometric discrepancy: 0.3963

The information below is about IL_6CZR_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37722.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

2

Unit IDs

4V8X|1|DA|C|2129
4V8X|1|DA|U|2130
4V8X|1|DA|G|2131
4V8X|1|DA|U|2132
4V8X|1|DA|G|2133
4V8X|1|DA|A|2134
4V8X|1|DA|A|2135
4V8X|1|DA|C|2136
4V8X|1|DA|C|2137
*
4V8X|1|DA|G|2154
4V8X|1|DA|G|2155
4V8X|1|DA|G|2156
4V8X|1|DA|G|2157
4V8X|1|DA|A|2158
4V8X|1|DA|G|2159

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain DC

50S RIBOSOMAL PROTEIN L1