Loop IL_4V8X

3D structure

PDB id: 4V8X (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of Thermus thermophilus ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å

Loop

Sequence: GACAUGCUAGGGAACCCG*UGGGGUGCCCCGCGAGGGGAGCCCUAGCAC
Length: 48 nucleotides
Bulged bases: 4V8X|1|AA|A|1005, 4V8X|1|AA|U|1025, 4V8X|1|AA|G|1026, 4V8X|1|AA|C|1029
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V8X|1|AA|G|993
4V8X|1|AA|A|994
4V8X|1|AA|C|995
4V8X|1|AA|A|996
4V8X|1|AA|U|997
4V8X|1|AA|G|998
4V8X|1|AA|C|999
4V8X|1|AA|U|1000
4V8X|1|AA|A|1001
4V8X|1|AA|G|1001|||A
4V8X|1|AA|G|1002
4V8X|1|AA|G|1003
4V8X|1|AA|A|1004
4V8X|1|AA|A|1005
4V8X|1|AA|C|1006
4V8X|1|AA|C|1007
4V8X|1|AA|C|1008
4V8X|1|AA|G|1009
*
4V8X|1|AA|U|1020
4V8X|1|AA|G|1021
4V8X|1|AA|G|1022
4V8X|1|AA|G|1023
4V8X|1|AA|G|1024
4V8X|1|AA|U|1025
4V8X|1|AA|G|1026
4V8X|1|AA|C|1027
4V8X|1|AA|C|1028
4V8X|1|AA|C|1029
4V8X|1|AA|C|1030
4V8X|1|AA|G|1030|||A
4V8X|1|AA|C|1030|||B
4V8X|1|AA|G|1030|||C
4V8X|1|AA|A|1030|||D
4V8X|1|AA|G|1031
4V8X|1|AA|G|1032
4V8X|1|AA|G|1033
4V8X|1|AA|G|1034
4V8X|1|AA|A|1035
4V8X|1|AA|G|1036
4V8X|1|AA|C|1037
4V8X|1|AA|C|1038
4V8X|1|AA|C|1039
4V8X|1|AA|U|1040
4V8X|1|AA|A|1041
4V8X|1|AA|G|1042
4V8X|1|AA|C|1043
4V8X|1|AA|A|1044
4V8X|1|AA|C|1045

Current chains

Chain AA: 16S ribosomal RNA

Nearby chains

Chain AN: 30S RIBOSOMAL PROTEIN S14 TYPE Z
Chain CG: 30S RIBOSOMAL PROTEIN S7
Chain DA: Large subunit ribosomal RNA; LSU rRNA

IL_4V8X_372