IL_4V8X_373

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GCGAUGC*GCUAAUCGC

Length

16 nucleotides

Bulged bases

4V8X|1|AA|U|1257, 4V8X|1|AA|U|1278, 4V8X|1|AA|A|1280, 4V8X|1|AA|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8X|1|AA|G|1253
4V8X|1|AA|C|1254
4V8X|1|AA|G|1255
4V8X|1|AA|A|1256
4V8X|1|AA|U|1257
4V8X|1|AA|G|1258
4V8X|1|AA|C|1259
*
4V8X|1|AA|G|1276
4V8X|1|AA|C|1277
4V8X|1|AA|U|1278
4V8X|1|AA|A|1279
4V8X|1|AA|A|1280
4V8X|1|AA|U|1281
4V8X|1|AA|C|1282
4V8X|1|AA|G|1283
4V8X|1|AA|C|1284

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S RIBOSOMAL PROTEIN S3

Chain AI

30S RIBOSOMAL PROTEIN S9

Chain AJ

30S RIBOSOMAL PROTEIN S10

Chain AN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain AU

30S RIBOSOMAL PROTEIN THX