IL_4V8X_383

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGAGCCUGUGAACCCCCG*UGGGGGGGAGGCGCCGGUGAAAUAC

Length

43 nucleotides

Bulged bases

4V8X|1|BA|U|2132, 4V8X|1|BA|G|2133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8X|1|BA|G|2124
4V8X|1|BA|G|2125
4V8X|1|BA|A|2126
4V8X|1|BA|G|2127
4V8X|1|BA|C|2128
4V8X|1|BA|C|2129
4V8X|1|BA|U|2130
4V8X|1|BA|G|2131
4V8X|1|BA|U|2132
4V8X|1|BA|G|2133
4V8X|1|BA|A|2134
4V8X|1|BA|A|2135
4V8X|1|BA|C|2136
4V8X|1|BA|C|2137
4V8X|1|BA|C|2138
4V8X|1|BA|C|2139
4V8X|1|BA|C|2140
4V8X|1|BA|G|2141
*
4V8X|1|BA|U|2150
4V8X|1|BA|G|2151
4V8X|1|BA|G|2152
4V8X|1|BA|G|2153
4V8X|1|BA|G|2154
4V8X|1|BA|G|2155
4V8X|1|BA|G|2156
4V8X|1|BA|G|2157
4V8X|1|BA|A|2158
4V8X|1|BA|G|2159
4V8X|1|BA|G|2160
4V8X|1|BA|C|2161
4V8X|1|BA|G|2162
4V8X|1|BA|C|2163
4V8X|1|BA|C|2164
4V8X|1|BA|G|2165
4V8X|1|BA|G|2166
4V8X|1|BA|U|2167
4V8X|1|BA|G|2168
4V8X|1|BA|A|2169
4V8X|1|BA|A|2170
4V8X|1|BA|A|2171
4V8X|1|BA|U|2172
4V8X|1|BA|A|2173
4V8X|1|BA|C|2174

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain BC

50S RIBOSOMAL PROTEIN L1