IL_4V8Y_027

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAUACA*UGUAAUU

Length

13 nucleotides

Bulged bases

4V8Y|1|B2|A|506

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Y|1|B2|G|480
4V8Y|1|B2|A|481
4V8Y|1|B2|U|482
4V8Y|1|B2|A|483
4V8Y|1|B2|C|484
4V8Y|1|B2|A|485
*
4V8Y|1|B2|U|502
4V8Y|1|B2|G|503
4V8Y|1|B2|U|504
4V8Y|1|B2|A|505
4V8Y|1|B2|A|506
4V8Y|1|B2|U|507
4V8Y|1|B2|U|508

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain A4

40S RIBOSOMAL PROTEIN S30-A

Chain AJ

40S RIBOSOMAL PROTEIN S9-A