IL_4V8Y_036

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UUG*CAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUG,CAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_036 not in the Motif Atlas

Geometric match to IL_4V9F_023

Geometric discrepancy: 0.1924

The information below is about IL_4V9F_023

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V8Y|1|B2|U|649
4V8Y|1|B2|U|650
4V8Y|1|B2|G|651
*
4V8Y|1|B2|C|683
4V8Y|1|B2|A|684
4V8Y|1|B2|A|685

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AJ

40S RIBOSOMAL PROTEIN S9-A

Chain AW

40S RIBOSOMAL PROTEIN S22-A