IL_4V8Y_040
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- UUU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_040 not in the Motif Atlas
- Homologous match to IL_4V88_424
- Geometric discrepancy: 0.217
- The information below is about IL_4V88_424
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
4V8Y|1|B2|U|748
4V8Y|1|B2|U|749
4V8Y|1|B2|U|750
*
4V8Y|1|B2|A|799
4V8Y|1|B2|U|800
4V8Y|1|B2|G|801
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AE
- 40S RIBOSOMAL PROTEIN S4-A
- Chain AH
- 40S RIBOSOMAL PROTEIN S7-A
- Chain AL
- 40S RIBOSOMAL PROTEIN S11-A
- Chain AW
- 40S RIBOSOMAL PROTEIN S22-A
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