IL_4V8Y_042

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

ACGUUUGG*CCAUCGU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Y|1|B2|A|817
4V8Y|1|B2|C|818
4V8Y|1|B2|G|819
4V8Y|1|B2|U|820
4V8Y|1|B2|U|821
4V8Y|1|B2|U|822
4V8Y|1|B2|G|823
4V8Y|1|B2|G|824
*
4V8Y|1|B2|C|848
4V8Y|1|B2|C|849
4V8Y|1|B2|A|850
4V8Y|1|B2|U|851
4V8Y|1|B2|C|852
4V8Y|1|B2|G|853
4V8Y|1|B2|U|854

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AH

40S RIBOSOMAL PROTEIN S7-A

Chain BR

60S RIBOSOMAL PROTEIN L19-B