IL_4V8Y_054

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

4V8Y|1|B2|U|1052

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_054 not in the Motif Atlas

Homologous match to IL_4V88_439

Geometric discrepancy: 0.2299

The information below is about IL_4V88_439

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V8Y|1|B2|G|1051
4V8Y|1|B2|U|1052
4V8Y|1|B2|G|1053
*
4V8Y|1|B2|C|1066
4V8Y|1|B2|C|1067

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain A1

40S RIBOSOMAL PROTEIN S27-A

Chain AA

40S RIBOSOMAL PROTEIN S0-A

Chain AB

40S RIBOSOMAL PROTEIN S1-A

Chain AR

40S RIBOSOMAL PROTEIN S17-A