IL_4V8Y_060

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_060 not in the Motif Atlas

Homologous match to IL_4V88_445

Geometric discrepancy: 0.0661

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

4V8Y|1|B2|G|1178
4V8Y|1|B2|G|1179
*
4V8Y|1|B2|C|1459
4V8Y|1|B2|A|1460
4V8Y|1|B2|C|1461

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain A7

SUPPRESSOR PROTEIN STM1

Chain AP

40S RIBOSOMAL PROTEIN S15

Chain AS

40S RIBOSOMAL PROTEIN S18-A

Chain CW

Transfer RNA; tRNA