IL_4V8Y_077

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_077 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.0657

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V8Y|1|B2|G|1540
4V8Y|1|B2|G|1541
4V8Y|1|B2|G|1542
4V8Y|1|B2|A|1543
4V8Y|1|B2|U|1544
4V8Y|1|B2|A|1545
*
4V8Y|1|B2|U|1566
4V8Y|1|B2|U|1567
4V8Y|1|B2|C|1568
4V8Y|1|B2|A|1569
4V8Y|1|B2|A|1570
4V8Y|1|B2|C|1571

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AS

40S RIBOSOMAL PROTEIN S18-A

Chain AT

40S RIBOSOMAL PROTEIN S19-A