IL_4V8Y_085

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_085 not in the Motif Atlas

Homologous match to IL_4V88_470

Geometric discrepancy: 0.0816

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V8Y|1|B2|U|1665
4V8Y|1|B2|U|1666
4V8Y|1|B2|A|1667
*
4V8Y|1|B2|U|1734
4V8Y|1|B2|U|1735
4V8Y|1|B2|G|1736

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AI

40S RIBOSOMAL PROTEIN S8-A

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BV

60S RIBOSOMAL PROTEIN L23-A