IL_4V8Y_092

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAC,GUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_092 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.2067

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V8Y|1|B5|G|5
4V8Y|1|B5|A|6
4V8Y|1|B5|C|7
*
4V8Y|1|B8|G|152
4V8Y|1|B8|U|153
4V8Y|1|B8|C|154

Current chains

Chain B5

25S RIBOSOMAL RNA

Chain B8

5.8S RIBOSOMAL RNA

Nearby chains

Chain BG

60S RIBOSOMAL PROTEIN L8-A

Chain BN

60S RIBOSOMAL PROTEIN L15-A