IL_4V8Y_098

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

4V8Y|1|B5|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_098 not in the Motif Atlas

Geometric match to IL_5TBW_007

Geometric discrepancy: 0.0793

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V8Y|1|B5|A|123
4V8Y|1|B5|U|124
*
4V8Y|1|B5|A|144
4V8Y|1|B5|G|145
4V8Y|1|B5|U|146
4V8Y|1|B5|U|147
4V8Y|1|B5|G|148
4V8Y|1|B5|U|149

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain BG

60S RIBOSOMAL PROTEIN L8-A

Chain BN

60S RIBOSOMAL PROTEIN L15-A