IL_4V8Y_101

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUU,AAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_101 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1143

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V8Y|1|B5|C|166
4V8Y|1|B5|U|167
4V8Y|1|B5|U|168
*
4V8Y|1|B5|A|254
4V8Y|1|B5|A|255
4V8Y|1|B5|G|256

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BL

60S RIBOSOMAL PROTEIN L13-A

Chain Bh

60S RIBOSOMAL PROTEIN L35-B