IL_4V8Y_107
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_107 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0446
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8Y|1|B5|G|404
4V8Y|1|B5|U|405
4V8Y|1|B5|G|406
4V8Y|1|B5|A|407
4V8Y|1|B5|A|408
4V8Y|1|B5|A|409
4V8Y|1|B5|U|410
*
4V8Y|1|B8|A|13
4V8Y|1|B8|C|14
4V8Y|1|B8|G|15
4V8Y|1|B8|G|16
4V8Y|1|B8|A|17
4V8Y|1|B8|U|18
4V8Y|1|B8|C|19
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
- Chain B8
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain BC
- 60S RIBOSOMAL PROTEIN L4-A
- Chain BP
- 60S RIBOSOMAL PROTEIN L17-A
- Chain Be
- 60S RIBOSOMAL PROTEIN L32
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