IL_4V8Y_109

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AGACAUGGCUGGG*CAUAAU

Length

19 nucleotides

Bulged bases

4V8Y|1|B5|U|620

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Y|1|B5|A|436
4V8Y|1|B5|G|437
4V8Y|1|B5|A|438
4V8Y|1|B5|C|439
4V8Y|1|B5|A|440
4V8Y|1|B5|U|441
4V8Y|1|B5|G|442
4V8Y|1|B5|G|443
4V8Y|1|B5|C|491
4V8Y|1|B5|U|492
4V8Y|1|B5|G|493
4V8Y|1|B5|G|494
4V8Y|1|B5|G|495
*
4V8Y|1|B5|C|618
4V8Y|1|B5|A|619
4V8Y|1|B5|U|620
4V8Y|1|B5|A|621
4V8Y|1|B5|A|622
4V8Y|1|B5|U|623

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BE

60S RIBOSOMAL PROTEIN L6-A

Chain Be

60S RIBOSOMAL PROTEIN L32

Chain Bf

60S RIBOSOMAL PROTEIN L33-A