IL_4V8Y_132

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_132 not in the Motif Atlas

Homologous match to IL_8C3A_042

Geometric discrepancy: 0.1721

The information below is about IL_8C3A_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

4V8Y|1|B5|A|997
4V8Y|1|B5|A|998
*
4V8Y|1|B5|U|1050
4V8Y|1|B5|U|1051
4V8Y|1|B5|U|1052

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BD

60S RIBOSOMAL PROTEIN L5

Chain BI

60S RIBOSOMAL PROTEIN L10

Chain BT

60S RIBOSOMAL PROTEIN L21-A