IL_4V8Y_146
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- AUA*UU
- Length
- 5 nucleotides
- Bulged bases
- 4V8Y|1|B5|U|1181
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_146 not in the Motif Atlas
- Homologous match to IL_5TBW_050
- Geometric discrepancy: 0.0642
- The information below is about IL_5TBW_050
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
4V8Y|1|B5|A|1180
4V8Y|1|B5|U|1181
4V8Y|1|B5|A|1182
*
4V8Y|1|B5|U|1324
4V8Y|1|B5|U|1325
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BF
- 60S RIBOSOMAL PROTEIN L7-A
- Chain BM
- 60S RIBOSOMAL PROTEIN L14-B
- Chain BO
- 60S RIBOSOMAL PROTEIN L16-A
- Chain BS
- 60S RIBOSOMAL PROTEIN L20-B
- Chain Bf
- 60S RIBOSOMAL PROTEIN L33-A
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