IL_4V8Y_149

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

4V8Y|1|B5|U|1208

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_149 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.1165

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V8Y|1|B5|G|1207
4V8Y|1|B5|U|1208
4V8Y|1|B5|G|1209
*
4V8Y|1|B5|C|1296
4V8Y|1|B5|C|1297

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BH

60S RIBOSOMAL PROTEIN L9-A

Chain BS

60S RIBOSOMAL PROTEIN L20-B

Chain Bm

UBIQUITIN-60S RIBOSOMAL PROTEIN L40