IL_4V8Y_153
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 4V8Y|1|B5|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_153 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.0539
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
4V8Y|1|B5|U|1388
4V8Y|1|B5|G|1389
4V8Y|1|B5|A|1390
4V8Y|1|B5|C|1391
4V8Y|1|B5|G|1392
4V8Y|1|B5|A|1393
4V8Y|1|B5|A|1394
4V8Y|1|B5|G|1395
*
4V8Y|1|B5|U|1415
4V8Y|1|B5|C|1416
4V8Y|1|B5|G|1417
4V8Y|1|B5|A|1418
4V8Y|1|B5|A|1419
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BC
- 60S RIBOSOMAL PROTEIN L4-A
- Chain BE
- 60S RIBOSOMAL PROTEIN L6-A
- Chain BP
- 60S RIBOSOMAL PROTEIN L17-A
- Chain BY
- 60S RIBOSOMAL PROTEIN L26-A
- Chain Be
- 60S RIBOSOMAL PROTEIN L32
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