IL_4V8Y_194

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

4V8Y|1|B5|A|2715

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_194 not in the Motif Atlas

Geometric match to IL_5WWT_001

Geometric discrepancy: 0.275

The information below is about IL_5WWT_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

4V8Y|1|B5|G|2714
4V8Y|1|B5|A|2715
4V8Y|1|B5|U|2716
*
4V8Y|1|B5|A|2740
4V8Y|1|B5|C|2741

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BT

60S RIBOSOMAL PROTEIN L21-A

Chain Bb

60S RIBOSOMAL PROTEIN L29

Chain Bo

60S RIBOSOMAL PROTEIN L42-A