IL_4V8Y_242

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGC,GCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_242 not in the Motif Atlas

Geometric match to IL_3RW6_004

Geometric discrepancy: 0.2389

The information below is about IL_3RW6_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V8Y|1|CN|C|2124
4V8Y|1|CN|G|2125
4V8Y|1|CN|C|2126
*
4V8Y|1|CN|G|2205
4V8Y|1|CN|C|2206
4V8Y|1|CN|G|2207

Current chains

Chain CN

EUKARYOTIC RIBOSOMAL L1_RRNA

Nearby chains

Chain AB

40S RIBOSOMAL PROTEIN S1-A

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain By

50S RIBOSOMAL PROTEIN L1

Chain CL

50S RIBOSOMAL PROTEIN L1