IL_4V8Y_256
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CGUAU*AAG
- Length
- 8 nucleotides
- Bulged bases
- 4V8Y|1|B5|A|1103
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_256 not in the Motif Atlas
- Homologous match to IL_8P9A_264
- Geometric discrepancy: 0.3526
- The information below is about IL_8P9A_264
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25463.2
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
4V8Y|1|B5|C|977
4V8Y|1|B5|G|978
4V8Y|1|B5|U|979
4V8Y|1|B5|A|980
4V8Y|1|B5|U|981
*
4V8Y|1|B5|A|1102
4V8Y|1|B5|A|1103
4V8Y|1|B5|G|1104
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BF
- 60S RIBOSOMAL PROTEIN L7-A
- Chain BQ
- 60S RIBOSOMAL PROTEIN L18-A
- Chain Bb
- 60S RIBOSOMAL PROTEIN L29
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