IL_4V8Y_260

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUCAAAGU*AACCAAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Y|1|B5|G|2210
4V8Y|1|B5|U|2211
4V8Y|1|B5|C|2212
4V8Y|1|B5|A|2213
4V8Y|1|B5|A|2214
4V8Y|1|B5|A|2215
4V8Y|1|B5|G|2216
4V8Y|1|B5|U|2217
*
4V8Y|1|B5|A|2228
4V8Y|1|B5|A|2229
4V8Y|1|B5|C|2230
4V8Y|1|B5|C|2231
4V8Y|1|B5|A|2232
4V8Y|1|B5|A|2233
4V8Y|1|B5|G|2234
4V8Y|1|B5|C|2235

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain Bi

60S RIBOSOMAL PROTEIN L36-A

Chain Bo

60S RIBOSOMAL PROTEIN L42-A

Chain CL

50S RIBOSOMAL PROTEIN L1

Chain CN

Large subunit ribosomal RNA; LSU rRNA

Chain CW

Transfer RNA; tRNA