3D structure

PDB id
4V90 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
CAAAC*GGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V90_036 not in the Motif Atlas
Homologous match to IL_4LFB_033
Geometric discrepancy: 0.0647
The information below is about IL_4LFB_033
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_05821.1
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
17

Unit IDs

4V90|1|AA|C|779
4V90|1|AA|A|780
4V90|1|AA|A|781
4V90|1|AA|A|782
4V90|1|AA|C|783
*
4V90|1|AA|G|799
4V90|1|AA|G|800
4V90|1|AA|U|801
4V90|1|AA|A|802
4V90|1|AA|G|803

Current chains

Chain AA
16S RIBOSOMAL RNA

Nearby chains

Chain AK
30S RIBOSOMAL PROTEIN S11
Chain BA
Large subunit ribosomal RNA; LSU rRNA
Chain BD
50S RIBOSOMAL PROTEIN L2

Coloring options:


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