IL_4V90_107

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGG*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V90_107 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.1378

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

4V90|1|BA|C|1040
4V90|1|BA|G|1041
4V90|1|BA|G|1042
*
4V90|1|BA|U|1113
4V90|1|BA|G|1114
4V90|1|BA|G|1115

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BH

50S RIBOSOMAL PROTEIN L6

Chain BZ

50S RIBOSOMAL PROTEIN L25